Public
This directory contains 13 workflows.
Append decoy database
Append decoy proteins to an existing protein fasta database.
Choose search engines & settings
Component to visually set the parameters of the "Searchengine combination" component (e.g. for the WebPortal).
Configure ConsensusID
Component to visually set the parameters of the ConsensusID component (e.g. for the WebPortal).
Configure rescoring procedures
Component to visually set the parameters of the PSM Rescoring component (e.g. for the WebPortal).
Consensus ID
Combines the results if multiple search engines were applied to the same mzML file. Requires rescoring to be applied (i.e. posterior (error) probabilities […]
FDR Filtering
Performs peptide-spectrum-match confidence estimation using the false discovery rate based on information from a peptide search on a combined target-decoy […]
Load existing experimental design
Load an experimental design (in TSV format) either locally or from the WebPortal
Load input database
Loads a protein database in fasta format and optionally adds "decoy" proteins for confidence scoring of identifications. Configure the component for a local […]
Load input spectra
Load input mass spectra in the open mzML(.gz) format. If your files are still in a raw vendor format, try to convert them first using external software or […]
MS Viewer
Interactively displays survey (MS1) scans of a mass-spectometry experiment in mzML format. It starts a python-based Bokeh server and connects to it in a […]