There are 3449 nodes that can be used as predessesor for a node with an input port of type Table.
Pindel - a pattern growth approach to detect breakpoints of large deletions and medium sized insertions from paired-end reads.
This node sorts the chromosomes of an input VCF file analogous to a given reference sequence.
This node filters annotated VCF files.
FastQC - Quality check for NGS read data.
FastQC - A quality control tool for high throughput sequence data.
This node can be used to merge statistics of FastQC modules.
The RawReadManipulator filters reads from fastQ/fastA files.
This node can be used to merge statistics of the RawReadManipulator node.
A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested […]
This node loads either one or two separate input file(s) or a list of files whereby it serves as a starting point for any NGS workflow.
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to mail@nodepit.com.
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.