Table — NodePit

There are 3449 nodes that can be used as predessesor for a node with an input port of type

This node uses the DESeq package to test for differential expression based on a model using the negative binomial distribution.

Assessing differential expression in comparative RNA-seq experiments.

The FeatureCountsMerger can be used to merge the results of multiple feature count runs.

The FilterLowExpressed node can be used to filter low expressed genes before differential expression analysis.

This node can detect differential expressed genes using the limma package.

bcftools — utilities for manipulating VCFs and BCFs.

Provides access to many functionalities of SAMtools.

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

This node can be used to merge statistics of the featureCounts node.

Tools to manipulate SAM/BAM files

Node Connectivity