phenobo version 2.1.6
PhenomizerToNetwork generates and displays a disease network for the diseases of PhenoDis.
The aim of the node is to visualize the predictions of Phenomizer within this network.
The node requires the program Cytoscape (recommended version 3.2.1) to show the resulting network.
The input of PhenomizerToNetwork consists of two different tables. The first table is the output of Phenomizer (including disease_ids and scores). The second table is a symmetric all-against-all matrix containing distance or similarity values for pairs of diseases. All columns have to be named with PhenoDis disease_ids except for one optional column with disease names. Furthermore, the row ids of the table have to be PhenoDis disease_ids. An example for such a matrix table is provided at https://github.com/marie-sophie/mapra.
The node does not produce any output table, but writes 4 files into a specified output directory.
To use this node in KNIME, download the below referenced file, save it to your KNIME's plugin folder and restart KNIME.
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