Symmetry

This node calculates the partition of heavy atoms in a CDK molecule into equivalent classes. The definition of equivalent classes is purely topological and the algorithm is derived from the algorithm by Hu, C.Y. and Xu, L., Algorithm for computer perception of topological symmetry, Analytical Chimica Acta, 1994, 295:127.

The node processes connected molecules only.

Options

Column with molecules: Select the column containing the molecular structure
Visualization only: Display the visual representation of the partitioning

Input Ports

: Table containing molecular structures

Output Ports

: As input but with new rows for each atom in the CDK molecule for which the signatures were calculated or just the visual representation of the partitioning if option selected

Views

This node has no views

Workflows

No workflows found

Developers

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Installation

To use this node in KNIME, install the extension KNIME-CDK from the below update site following our NodePit Product and Node Installation Guide:

v5.3

A zipped version of the software site can be downloaded here.

Plugin provider: KNIME GmbH, Konstanz and EMBL-EBI, Cambridge

Plugin version: 1.5.700.v202407101048

On NodePit since: 2024-07-11

Last update: 2024-11-21

KNIME versions: v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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