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tools

NGS related tools

This category contains 11 nodes.

Bash 

Run a BASH command in a given directory and output the result in a table one line = one cell * none line = one row.

CmdwInput 

execute command using input as command-line and path information

CollectionLinePlot 

Create an in-table SVG graphics for a numerical collection column

FQCRow2Table 

Creates a table from the first row

JoinSorted 

Simple, but fast join of two tables based on two columns.

NGSconcat 

concats 2 tables

Seq2PosIncidents Deprecated

takes the sequences from a column and its directionality from a different collumn, the chromosome and its position and then creates rows for each base. * […]

Table2FQCrow 

Convert a table to a FQC entry

TableSpecs 

calculate simple table/column stats