Run Maestro Command 

This node runs Maestro command(s) by running Maestro, executing a script and writing its output.

RMSD 

Calculate the RMSD between structures

Protein Preparation Wizard Deprecated

Preparation of proteins for use in calculations with other Schrödinger products.

Extract Atom/bond Properties 

This node takes in structures in Maestro, Sdf and Mol2 formats and outputs the properties for the CTs, Atoms, and Bonds into three different output tables

Desmond Molecular Dynamics 

Set up and run Desmond molecular dynamics simulations.

Maestro Molecular Properties 

Calculate molecular properties for a set of structures.

Molecule Reader (to MAE) 

Read molecules in Maestro, SD, Mol2, SMILES, CIF or PDB format