Molecular Dynamics

This category contains 4 nodes.

Desmond Molecular Dynamics 

Set up and run Desmond molecular dynamics simulations.

Desmond System Builder 

The System Builder panel allows you to set up a biological system consisting of proteins, ligands, explicit solvent, membrane, and counter ions, so that […]

Desmond Trajectory Extract Frames 

Extract frames from the specified Desmond trajectory directory.

Desmond Trajectory Manipulation 

Copy, move and delete Desmond Trajectory files and directories.