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Molecular Dynamics

This category contains 4 nodes.

Desmond Molecular Dynamics

Set up and run Desmond molecular dynamics simulations.

Desmond System Builder

The System Builder panel allows you to set up a biological system consisting of proteins, ligands, explicit solvent, membrane, and counter ions, so […]

Desmond Trajectory Extract Frames

Extract frames from the specified Desmond trajectory directory.

Desmond Trajectory Manipulation

Copy, move and delete Desmond Trajectory files and directories.