SMARTS Query 

Filters molecules based on a SMARTS search

Formula Writer 

Saves model formulas to the internal database

DatabaseSuitability 

Computes a suitability score for a database which was used for a peptide identification search. Also reports the quality of LC-MS spectra.

MultiplexResolver 

Completes peptide multiplets and resolves conflicts within them.

RawFileConverter 

Converts between different MS file formats.

Conformal Calibration Loop End 

Aggregates the results of conformal prediction training for classification or regression: calibration tables and models.

QCCalculator 

Calculates basic quality parameters from MS experiments and subsequent analysis data as identification or feature detection.

SSMD (PC x NC) 

Calculates SSMDs (strictly standardized mean difference) for all combinations of a selection of negative and a selection of positive controls.