RDKit Structure Normalizer 

Checks structures and tries to normalize them, if necessary.

RDKit Two Component Reaction Deprecated

Applies a reaction to two RDKit Mol columns

Formula Creator 

Enter primary and secondary model formulas

PhosphoScoring 

Scores potential phosphorylation sites in order to localize the most probable sites.

OpenPepXL 

Protein-protein cross-linking identification using labeled linkers.

IDDecoyProbability 

Estimates peptide probabilities using a decoy search strategy. WARNING: This util is deprecated.

FileConverter 

Converts between different MS file formats.

3D WHIM 

Holistic descriptors described by Todeschini et al. The descriptors are based on a number of atom weightings. There are 5 different possible weightings […]

RDKit Find Murcko Scaffolds Streamable

Generates the Murcko scaffold for an input RDKit Mol column