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Missing Loop Refinement

Workflow

MIssing loop refinement
Refine all the loops that were added using 'Fill loops' option in the Protein Preparation node and then compare it with initial stucture.
Protein
MIssing loop refinement: Refine all the loops that were added using 'Fill loops' option in the Protein Preparation node and then compare it with initial stucture. 1jrh ResiduesFill missing loops Loopstart - endChain,Residue number,insertion codeRefineLoops--loopstartLoop rebuilt Range<>1 EndRange<>1 Start Loop numberstarting at 0 Loop numberstarting at 1RefineLoops--loopendPrime log Enforce inclusionLoop number,Refine loops %file% PDB IDInitial structure Get PDB Extract Atom/bondProperties GroupBy Protein PreparationWizard Column Appender Sorter String Manipulation Row Filter Moving Aggregation Row Filter Moving Aggregation Row Filter Counter Generation Counter Generation String Manipulation ChemistryExternal Tool Table Viewer Run Maestro Concatenate (Optionalin) (deprecated) Column Filter Sorter Concatenate (Optionalin) (deprecated) Molecule Writer(from MAE) Extract Properties ConstantValue Column Set Molecule Title Set Molecule Title MIssing loop refinement: Refine all the loops that were added using 'Fill loops' option in the Protein Preparation node and then compare it with initial stucture. 1jrh ResiduesFill missing loops Loopstart - endChain,Residue number,insertion codeRefineLoops--loopstartLoop rebuilt Range<>1 EndRange<>1 Start Loop numberstarting at 0 Loop numberstarting at 1RefineLoops--loopendPrime log Enforce inclusionLoop number,Refine loops %file% PDB IDInitial structure Get PDB Extract Atom/bondProperties GroupBy Protein PreparationWizard Column Appender Sorter String Manipulation Row Filter Moving Aggregation Row Filter Moving Aggregation Row Filter Counter Generation Counter Generation String Manipulation ChemistryExternal Tool Table Viewer Run Maestro Concatenate (Optionalin) (deprecated) Column Filter Sorter Concatenate (Optionalin) (deprecated) Molecule Writer(from MAE) Extract Properties ConstantValue Column Set Molecule Title Set Molecule Title

Download

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Nodes

Missing Loop Refinement consists of the following 27 nodes(s):

Plugins

Missing Loop Refinement contains nodes provided by the following 5 plugin(s):