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03_​ChEMBL_​Bioactivity_​Search

This workflow uses REST API of ChEMBLdb and native KNIME nodes to extract a data set of ligands for a certain biological target.
Required Input: CHEMBLID of a biological target

03_ChEMBL_Bioactivity_SearchThis workflow uses REST API of ChEMBLdb and native KNIME nodes to extract a data set of ligands for a certain biological target. Required Input: CHEMBLID of a biological target Perform GET Request to extract bioactivities for a certain biological target Optional: Deploy this workflow to KNIME Server and use the Wrapped Metanode"Download file" to download the results ca 10s per 1000 molsSelect compoundsDefine file name and select columnsfor webportalsave the results inside the workflowWrite result to diskD:\compounds.xlsx Input CHEMBLID GET activitiescount GET activities View REST results Select File Entries Download File Excel Writer Excel Writer 03_ChEMBL_Bioactivity_SearchThis workflow uses REST API of ChEMBLdb and native KNIME nodes to extract a data set of ligands for a certain biological target. Required Input: CHEMBLID of a biological target Perform GET Request to extract bioactivities for a certain biological target Optional: Deploy this workflow to KNIME Server and use the Wrapped Metanode"Download file" to download the results ca 10s per 1000 molsSelect compoundsDefine file name and select columnsfor webportalsave the results inside the workflowWrite result to diskD:\compounds.xlsx Input CHEMBLID GET activitiescount GET activities View REST results Select File Entries Download File Excel Writer Excel Writer

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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Created by: daria_knime
Created at: 2018-05-29
On NodePit since: 2022-02-06
Last update: 2026-01-23
Created with KNIME version: v4.4.0

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