This directory contains 5 workflows.
Workflow to check, whether everything is set up for PIA (with OpenMS). Please execute this workflow (double triangles / fast forward symbol at the very […]
This workflow is very basic. It performs a spectrum identification using X!Tandem, followed by the protein inference with PIA. You can find tutorial input […]
This workflow performs a spectrum identification using X!Tandem and MS-GF+, followed by merging the spectrum identifications and the protein inference with […]
Basic Label Free Quantification Workflow. The workflow first identifies the spectra using X!Tandem and detects the features with the FeatureFinderMultiplex. […]
This workflow downloads files from PRIDE and performs a re-analysis using PIA
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to firstname.lastname@example.org, follow @NodePit on Twitter, or chat on Gitter!
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.