PIA

This directory contains 5 workflows.

Icon00-test_​workflow 

Workflow to check, whether everything is set up for PIA (with OpenMS). Please execute this workflow (double triangles / fast forward symbol at the very […]

Icon01-PIA_​first_​analysis 

This workflow is very basic. It performs a spectrum identification using X!Tandem, followed by the protein inference with PIA. You can find tutorial input […]

Icon01t-PIA_​with_​multiple_​search_​engines 

This workflow performs a spectrum identification using X!Tandem and MS-GF+, followed by merging the spectrum identifications and the protein inference with […]

Icon02-PIA_​and_​quant 

Basic Label Free Quantification Workflow. The workflow first identifies the spectra using X!Tandem and detects the features with the FeatureFinderMultiplex. […]

IconPIA_​PRIDE_​reanalysis 

This workflow downloads files from PRIDE and performs a re-analysis using PIA