PIA
This directory contains 5 workflows.
00-test_workflow
Workflow to check, whether everything is set up for PIA (with OpenMS). Please execute this workflow (double triangles / fast forward symbol at the very […]
01-PIA_first_analysis
This workflow is very basic. It performs a spectrum identification using X!Tandem, followed by the protein inference with PIA. You can find tutorial input […]
01t-PIA_with_multiple_search_engines
This workflow performs a spectrum identification using X!Tandem and MS-GF+, followed by merging the spectrum identifications and the protein inference with […]
02-PIA_and_quant
Basic Label Free Quantification Workflow. The workflow first identifies the spectra using X!Tandem and detects the features with the FeatureFinderMultiplex. […]
PIA_PRIDE_reanalysis
This workflow downloads files from PRIDE and performs a re-analysis using PIA