Generic Port — NodePit

There are 4972 nodes that can be used as predessesor for a node with an input port of type

The FilterLowExpressed node can be used to filter low expressed genes before differential expression analysis.

This node can detect differential expressed genes using the limma package.

bcftools — utilities for manipulating VCFs and BCFs.

Provides access to many functionalities of SAMtools.

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

This node can be used to merge statistics of the featureCounts node.

Tools to manipulate SAM/BAM files

Pindel - a pattern growth approach to detect breakpoints of large deletions and medium sized insertions from paired-end reads.

This node sorts the chromosomes of an input VCF file analogous to a given reference sequence.

This node filters annotated VCF files.

Node Connectivity