Generic Port — NodePit

There are 4972 nodes that can be used as predessesor for a node with an input port of type

This node is a wrapper for the SnpSift toolbox.

Variant Effect Predictor (VEP) - annotates genomic variants.

This node filters VCF files annotated by VEP.

Combines any number of gVCF files that were produced by the Haplotype Caller into a single joint gVCF file.

Combines any number of VCF lists that were produced by Pindel into a single joint VCF file.

Assess sequence coverage by a wide array of metrics, partitioned by sample, read group, or library.

Recalibration of sequencing quality scores.

Calls germline SNPs and indels via local re-assembly of haplotypes.

Computes the most likely genotype combination and phases trios and parent/child pairs.

Realignment around insertions and deletions.

Node Connectivity