Generic Port — NodePit

There are 5510 nodes that can be used as predessesor for a node with an input port of type

Combines any number of VCF lists that were produced by Pindel into a single joint VCF file.

Assess sequence coverage by a wide array of metrics, partitioned by sample, read group, or library.

Recalibration of sequencing quality scores.

Calls germline SNPs and indels via local re-assembly of haplotypes.

Computes the most likely genotype combination and phases trios and parent/child pairs.

Realignment around insertions and deletions.

Selects a subset of variants from a larger callset.

Calls SNPs and indels.

Filters variant calls based on INFO and FORMAT annotations.

Performs joint genotyping on gVCF files produced by HaplotypeCaller.

Node Connectivity