Node Connectivity

There are 5519 nodes that can be used as predessesor for a node with an input port of type Generic Port.

Pindel 

Pindel - a pattern growth approach to detect breakpoints of large deletions and medium sized insertions from paired-end reads.

VCFSorter 

This node sorts the chromosomes of an input VCF file analogous to a given reference sequence.

VCFToolsFilter 

This node filters annotated VCF files.

FastQC 

FastQC - Quality check for NGS read data.

FastQC_​v2 

FastQC - A quality control tool for high throughput sequence data.

FastqcStatisticMerger 

This node can be used to merge statistics of FastQC modules.

RawReadManipulator 

The RawReadManipulator filters reads from fastQ/fastA files.

RawReadManipulatorStatisticMerger 

This node can be used to merge statistics of the RawReadManipulator node.

TrimGalore 

A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested […]

FileLoader 

This node loads either one or two separate input file(s) or a list of files whereby it serves as a starting point for any NGS workflow.