Node Connectivity

There are 5522 nodes that can be used as predessesor for a node with an input port of type Generic Port.

GATKHaplotypeCaller 

Calls germline SNPs and indels via local re-assembly of haplotypes.

GATKPhaseByTransmission 

Computes the most likely genotype combination and phases trios and parent/child pairs.

GATKRealignment 

Realignment around insertions and deletions.

GATKSelectVariants 

Selects a subset of variants from a larger callset.

GATKUnifiedGenotyper 

Calls SNPs and indels.

GATKVariantFiltration 

Filters variant calls based on INFO and FORMAT annotations.

GenotypeGVCFs 

Performs joint genotyping on gVCF files produced by HaplotypeCaller.

MergeTwoVCFs 

This node merges two VCF files into one combined VCF file.

VCFMerger 

Combines VCF records from different sources.

VQSR 

Creates a Gaussian mixture model by looking at the annotations values over a high quality subset of the input call set and then evaluate all input variants.