Node Connectivity

There are 5113 nodes that can be used as predessesor for a node with an input port of type Generic Port.

Desmond Molecular Dynamics 

Set up and run Desmond molecular dynamics simulations.

Desmond Trajectory Extract Frames 

Extract frames from the specified Desmond trajectory directory.

Desmond Trajectory Manipulation 

Copy, move and delete Desmond Trajectory files and directories.

FEP+ Parser 

Analyze FEP calculations for the relative binding affinities of a set of congeneric ligands to a target.

Jaguar Single Point Energy 

Calculate the energy of a molecule using Quantum Mechanics

Jaguar Minimization 

Minimize molecules using Quantum Mechanics

Jaguar NMR Shielding Constants 

Calculate NMR shielding constants by running a Jaguar single point energy calculation with the NMR option turned on (keyword nmr=1).

Jaguar Charges 

Calculate charges by fitting Electrostatic Potential Charges (ESP) to atom centers.

MOPAC 

Set up and run a semiempirical calculation on one or more structures using the MOPAC code

Ligfilter 

Ligand Filter Script