Table — NodePit

There are 3946 nodes that can be used as predessesor for a node with an input port of type

Bowtie - an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

Segemehl - Heuristic mapping of short read sequences with gaps

STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays and is "splice aware".

This node can be used to merge statistics of the STAR node.

Filters and prioritizes genetic variants from whole exome sequencing data.

SnpEff annotates and predicts the effects of genetic variants.

This node is a wrapper for the SnpSift toolbox.

Variant Effect Predictor (VEP) - annotates genomic variants.

This node filters VCF files annotated by VEP.

Combines any number of gVCF files that were produced by the Haplotype Caller into a single joint gVCF file.

Node Connectivity