Node Connectivity

There are 3898 nodes that can be used as predessesor for a node with an input port of type Table.

GPCRDB Structures of a protein 

Get a list of structures of a protein

Kinase ID Mapper 

KNIME node to map a set of kinase names, HGNC gene symbols, or UniProt accession codes to the corresponding KLIFS kinase ID.

Kinase Information Retriever 

KNIME node to retrieve all generic kinase information from KLIFS optionally restricted to a user-supplied set of kinase IDs.

Interaction Fingerprint Decomposer 

KNIME node for decomposing an interaction fingerprint into a more human readable overview of interactions (including types) per structure.

Interaction Fingerprint Retriever 

KNIME node to retrieve the interaction fingerprint of specific kinase-ligand complexes from KLIFS.

Interaction Types Retriever 

KNIME node to retrieve the different interaction types that are encoded for each pocket residue in the interaction fingerprint.

Ligands Overview Retriever 

KNIME node to retrieve a list of all co-crystallized ligands (optionally for a given set of kinase IDs) from KLIFS.

Structures Overview Retriever 

KNIME node to retrieve a list of structure IDs from KLIFS of structures in complex with specific kinases (kinase IDs) or ligands (ligand IDs).

Structures PDB Mapper 

KNIME node to map a set of 4-letter PDB-codes to structure IDs from KLIFS.

Structures Retriever 

KNIME node to retrieve (a part of) a kinase-ligand complex as a 3D structure in MOL2/PDB format from KLIFS.