Node Connectivity

There are 3029 nodes that can be used as successor for a node with an output port of type Table.

Protein Preparation Workflow 

Set up and run the protein preparation.

Protein Assignment 

Assign chi angles in residues and orientation of waters.

BLAST 

Search a protein sequence database using BLAST

Prime Build Homology Model 

Build homology models

Prime Minimization 

Minimize molecules using Prime

Prime Energy 

Evaluate the energy and its components for one or more proteins

Prime Refine Loops 

Refine the structure of loops in the input protein

Prime Side Chain Sampling 

Refines protein structures via side chain prediction

Residue Scanning 

Bioluminate residue scanning: Mutates and refines residues and proteins

Induced Fit Docking 

Set up a sequence of jobs in which ligands are docked with Glide, then Prime Refinement is used to allow the receptor to relax, and the ligands are […]