This category is currently not available in KNIME v5.2 — instead we’re showing this page for KNIME v4.0. You can use the version menu in the title bar to permanently switch your preferred version. This will also show the link to the update site.

Protein

This category contains 5 nodes.

Align Binding Sites

This node performs a pairwise superposition of multiple structures using the C-alpha atoms of selected residues.

Assign Bond Orders

This node uses assignbondorders.py to assign double and triple bonds to structures in the workspace based on molecular geometry (bond length, bond angles, […]

Get PDB

Retrieves PDB for the structure(s) with PDB code(s).

Protein Structure Alignment

Align Protein structures using SKA

Rotate All

Rotates all structures into a new reference frame