Node Connectivity

There are 5216 nodes that can be used as predessesor for a node with an input port of type Generic Port.

VQSR 

Creates a Gaussian mixture model by looking at the annotations values over a high quality subset of the input call set and then evaluate all input variants.

DESeq 

This node uses the DESeq package to test for differential expression based on a model using the negative binomial distribution.

EdgeR 

Assessing differential expression in comparative RNA-seq experiments.

FeatureCountsMerger 

The FeatureCountsMerger can be used to merge the results of multiple feature count runs.

FilterLowExpressed 

The FilterLowExpressed node can be used to filter low expressed genes before differential expression analysis.

Limma 

This node can detect differential expressed genes using the limma package.

Bcftools 

bcftools — utilities for manipulating VCFs and BCFs.

SamTools 

Provides access to many functionalities of SAMtools.

FeatureCounts 

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

FeatureCountsStatisticMerger 

This node can be used to merge statistics of the featureCounts node.