Generic Port — NodePit

There are 5216 nodes that can be used as predessesor for a node with an input port of type

Resolves ambiguous annotations of features with peptide identifications

Estimates peptide probabilities using a decoy search strategy. WARNING: This util is deprecated.

Extracts 'n' peptides randomly or best 'n' from idXML files.

Assigns protein/peptide identifications to features or consensus features.

Calculates a distribution of the mass error from given mass spectra and IDs.

Estimates probabilities for incorrectly assigned peptide sequences and a set of search engine scores using a mixture model.

Switches between different scores of peptide or protein hits in identification data

Computes extra features for each input PSM.

Refreshes the protein references for all peptide hits.

Scores potential phosphorylation sites in order to localize the most probable sites.

Node Connectivity