Node Connectivity

There are 3029 nodes that can be used as successor for a node with an output port of type Table.

ConfGen Standard Deprecated

Macromodel conformational search using one of four predefined and well-characterized ligand torsion search methods.

Desalter Deprecated

Eliminates all molecules except the molecule with the largest number of atoms in each structure.

Desmond Molecular Dynamics Deprecated

Set up and run Desmond molecular dynamics simulations.

Desmond System Builder Deprecated

Set up a biological system to carry out Desmond simulations.

Glide Ensemble Docking Deprecated

Glide Ligand Docking Deprecated

Dock Ligands using Glide SP, XP or HTVS

Glide One Step Docking Deprecated

This node performs the Glide grid generation and ligand docking.

Induced Fit Docking Deprecated

This node allows one to set up a sequence of jobs in which ligands are docked with Glide, then Prime Refinement is used to allow the receptor to relax, […]

Ionizer Deprecated

Produces multiple structures for each input structure, with different combinations of ionized states based on the ionizable groups present.

Neutralizer Deprecated

Neutralizes functional groups where possible by adding or removing protons.