This category contains 206 nodes.
Flexible reader for ASCII files.
Eliminates all molecules except the molecule with the largest number of atoms in each structure.
Set up and run Desmond molecular dynamics simulations.
Set up a biological system to carry out Desmond simulations.
Dock Ligands using Glide SP, XP or HTVS
This node performs the Glide grid generation and ligand docking.
This node allows one to set up a sequence of jobs in which ligands are docked with Glide, then Prime Refinement is used to allow the receptor to relax, […]
Produces multiple structures for each input structure, with different combinations of ionized states based on the ionizable groups present.
Read molecules in Mol2 format
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