Phase DB Creation 

Creates a Phase 3D Database and conformations

MAE-to-Pdb 

Convert Maestro to PDB format

Get PDB 

Retrieves PDB structure()s) for the specified PDB code(s).

ConfGen 

Search for ligand conformations like those found in ligand-receptor complexes, with optional minimization of output structures.

Molecule-to-MAE 

Convert Smiles, Mol2, SD or PDB to Maestro

Desmond System Builder 

The System Builder panel allows you to set up a biological system consisting of proteins, ligands, explicit solvent, membrane, and counter ions, so […]

Bioisostere Replacement 

Replace functional groups on a set of ligands with the corresponding bioisosteres, generating all single replacements.

Stereoizer Deprecated

Labels stereochemical features or generates structures based upon the chiral properties of the chiral atoms in the structure.

SiteMap 

Carries out a site-finding job