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Binding site 1

SiteMap binding site characterization

Identify and characterize possible ligand binding sites (allosteric sites). Generate the ligand Interaction Diagrams.

[Requires: SiteMap]

The SiteMap node is used in more complex workflow examples:
- Real work examples - SiteMap and docking
- Real work examples - Binding site shape clustering

SiteMap binding site characterization:Identify and characterize possible ligand binding sites (allosteric sites). Generate the ligand Interaction Diagrams.[Requires: SiteMap]The SiteMap node is used in more complex workflow examples:- Real work examples - SiteMap and docking- Real work examples - Binding site shape clusteringProtein-ligand complexes%GUIsetting%Site propertiesSitemap termsProtein and largest ligand Only the largest sites (> 100)Possible binding site visualizationGet PDB Protein PreparationWizard Table Viewer Extract Properties Split complexes SiteMap Run Maestro SiteMap binding site characterization:Identify and characterize possible ligand binding sites (allosteric sites). Generate the ligand Interaction Diagrams.[Requires: SiteMap]The SiteMap node is used in more complex workflow examples:- Real work examples - SiteMap and docking- Real work examples - Binding site shape clusteringProtein-ligand complexes%GUIsetting%Site propertiesSitemap termsProtein and largest ligand Only the largest sites (> 100)Possible binding site visualizationGet PDB Protein PreparationWizard Table Viewer Extract Properties Split complexes SiteMap Run Maestro

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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On NodePit since: 2021-03-02
Last update: 2023-03-31
Created with KNIME version: v4.1.3
Tags: DockingSiteMap