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Proteomics_​LFQ

Workflow

Basic data analysis. Peptide quantities Updated for OpenMS 2.4.0Replacesconsensus_peptide_identificationfdr_peptide_identificationlfq_and_peptide_identificationlfq_complete_with_simple_analysisCurrently not that easy to merge:labelfree_with_protein_quantification due to special settings/ID adaptions due to Fido Identificationsmapped to featuresSeperate human spike-inpeptides from backgroundSelect intensitiesLogarithmizePlot intensity distributionLogarithmizeSelect intensitiesPlot intensity distributionFeaturedetectionMap IDson featuresIdentificationsNormalizeintensitiesRTalignmentLink correspondingfeaturesacross runsSpectra (*.mzML)Database (*.fasta)Consensus identificationsExportNode 180 ZipLoopStart ZipLoopEnd Output Folder Output Folder Row Splitter Column Filter R Snippet Box Plot (local) R Snippet Column Filter Box Plot (local) TextExporter FeatureFinderCentroided IDMapper Output Folder Histogram (local) ConsensusMapNormalizer MapAlignerPoseClustering FeatureLinkerUnlabeledQT Input Files Input File Output Folder IDTextReader Histogram (local) TextExporter ConsensusTextReader ID and Consensus ID Basic data analysis. Peptide quantities Updated for OpenMS 2.4.0Replacesconsensus_peptide_identificationfdr_peptide_identificationlfq_and_peptide_identificationlfq_complete_with_simple_analysisCurrently not that easy to merge:labelfree_with_protein_quantification due to special settings/ID adaptions due to Fido Identificationsmapped to featuresSeperate human spike-inpeptides from backgroundSelect intensitiesLogarithmizePlot intensity distributionLogarithmizeSelect intensitiesPlot intensity distributionFeaturedetectionMap IDson featuresIdentificationsNormalizeintensitiesRTalignmentLink correspondingfeaturesacross runsSpectra (*.mzML)Database (*.fasta)Consensus identificationsExportNode 180 ZipLoopStart ZipLoopEnd Output Folder Output Folder Row Splitter Column Filter R Snippet Box Plot (local) R Snippet Column Filter Box Plot (local) TextExporter FeatureFinderCentroided IDMapper Output Folder Histogram (local) ConsensusMapNormalizer MapAlignerPoseClustering FeatureLinkerUnlabeledQT Input Files Input File Output Folder IDTextReader Histogram (local) TextExporter ConsensusTextReader ID and Consensus ID

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Nodes

Proteomics_​LFQ consists of the following 39 nodes(s):

Plugins

Proteomics_​LFQ contains nodes provided by the following 5 plugin(s):