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article_​grabber_​pubmed

PubMed Query Samplehasabstract[text] AND ("humans"[MeSH Terms] OR "humans"[All Fields] OR "human"[All Fields]) AND (("genes"[MeSH Terms] OR "genes"[All Fields] OR "gene"[All Fields])OR chromosome region[All Fields] OR ("dna"[MeSH Terms] OR "dna"[All Fields]) OR ("genomics"[MeSH Terms] OR "genomics"[All Fields] OR "genomic"[All Fields] OR"genome"[MeSH Terms] OR "genome"[All Fields]) OR ("exome"[MeSH Terms] OR "exome"[All Fields]) OR transcript[All Fields] OR locus[All Fields] OR loci[All Fields] ORvariant[All Fields] OR variation[All Fields] OR ("mutation"[MeSH Terms] OR "mutation"[All Fields]) OR ("polymorphism, genetic"[MeSH Terms] OR ("polymorphism"[All Fields]AND "genetic"[All Fields]) OR "genetic polymorphism"[All Fields] OR "polymorphism"[All Fields]) OR SNP[All Fields] OR CNV[All Fields] OR ("indel mutation"[MeSH Terms]OR ("indel"[All Fields] AND "mutation"[All Fields]) OR "indel mutation"[All Fields] OR "indel"[All Fields]) OR monogenic[All Fields] OR ("genotype"[MeSH Terms] OR"genotype"[All Fields]) OR ("alleles"[MeSH Terms] OR "alleles"[All Fields] OR "allele"[All Fields]) OR mutational spectrum[All Fields] OR copy-number variations[All Fields]OR rare variants[All Fields] OR ("genetic therapy"[MeSH Terms] OR ("genetic"[All Fields] AND "therapy"[All Fields]) OR "genetic therapy"[All Fields] OR "genetic"[All Fields])OR ("biomarkers"[MeSH Terms] OR "biomarkers"[All Fields] OR "biomarker"[All Fields]) OR ("pharmacogenetics"[MeSH Terms] OR "pharmacogenetics"[All Fields] OR"pharmacogenomics"[All Fields]) OR ("pharmacogenetics"[MeSH Terms] OR "pharmacogenetics"[All Fields]) OR ("nutrigenomics"[MeSH Terms] OR "nutrigenomics"[AllFields]) OR ("nutrigenomics"[MeSH Terms] OR "nutrigenomics"[All Fields] OR "nutrigenetics"[All Fields]) OR complex trait[All Fields] OR ("genome-wide associationstudy"[MeSH Terms] OR ("genome-wide"[All Fields] AND "association"[All Fields] AND "study"[All Fields]) OR "genome-wide association study"[All Fields] OR "gwas"[AllFields]) OR ("association"[MeSH Terms] OR "association"[All Fields]) OR germline[All Fields] OR ("diploidy"[MeSH Terms] OR "diploidy"[All Fields] OR "somatic"[All Fields])OR mosaic[All Fields] OR ("mosaicism"[MeSH Terms] OR "mosaicism"[All Fields]) OR Novo, De[Full Author Name] OR ("congenital"[Subheading] OR "congenital"[AllFields]) OR ("family"[MeSH Terms] OR "family"[All Fields] OR "familial"[All Fields]) OR hereditary[All Fields] OR inherited[All Fields]) AND 1990/02 : 2016/04 [EDAT] This process fetches documents (abstracts) from a source, in this case Pubmed. The query for abstract retrieval resides in an external configuration file, passed asparameter. Output is cleaned up and formatted as CSV delimited file. set query datesselect colsyear and urlformat colnameswriteformattedwrite loggarbage delimitersget query Document Grabber Document DataExtractor Java Snippet Column Filter Java Snippet Column Resorter Column Rename CSV Writer CSV Writer Java Snippet File Reader PubMed Query Samplehasabstract[text] AND ("humans"[MeSH Terms] OR "humans"[All Fields] OR "human"[All Fields]) AND (("genes"[MeSH Terms] OR "genes"[All Fields] OR "gene"[All Fields])OR chromosome region[All Fields] OR ("dna"[MeSH Terms] OR "dna"[All Fields]) OR ("genomics"[MeSH Terms] OR "genomics"[All Fields] OR "genomic"[All Fields] OR"genome"[MeSH Terms] OR "genome"[All Fields]) OR ("exome"[MeSH Terms] OR "exome"[All Fields]) OR transcript[All Fields] OR locus[All Fields] OR loci[All Fields] ORvariant[All Fields] OR variation[All Fields] OR ("mutation"[MeSH Terms] OR "mutation"[All Fields]) OR ("polymorphism, genetic"[MeSH Terms] OR ("polymorphism"[All Fields]AND "genetic"[All Fields]) OR "genetic polymorphism"[All Fields] OR "polymorphism"[All Fields]) OR SNP[All Fields] OR CNV[All Fields] OR ("indel mutation"[MeSH Terms]OR ("indel"[All Fields] AND "mutation"[All Fields]) OR "indel mutation"[All Fields] OR "indel"[All Fields]) OR monogenic[All Fields] OR ("genotype"[MeSH Terms] OR"genotype"[All Fields]) OR ("alleles"[MeSH Terms] OR "alleles"[All Fields] OR "allele"[All Fields]) OR mutational spectrum[All Fields] OR copy-number variations[All Fields]OR rare variants[All Fields] OR ("genetic therapy"[MeSH Terms] OR ("genetic"[All Fields] AND "therapy"[All Fields]) OR "genetic therapy"[All Fields] OR "genetic"[All Fields])OR ("biomarkers"[MeSH Terms] OR "biomarkers"[All Fields] OR "biomarker"[All Fields]) OR ("pharmacogenetics"[MeSH Terms] OR "pharmacogenetics"[All Fields] OR"pharmacogenomics"[All Fields]) OR ("pharmacogenetics"[MeSH Terms] OR "pharmacogenetics"[All Fields]) OR ("nutrigenomics"[MeSH Terms] OR "nutrigenomics"[AllFields]) OR ("nutrigenomics"[MeSH Terms] OR "nutrigenomics"[All Fields] OR "nutrigenetics"[All Fields]) OR complex trait[All Fields] OR ("genome-wide associationstudy"[MeSH Terms] OR ("genome-wide"[All Fields] AND "association"[All Fields] AND "study"[All Fields]) OR "genome-wide association study"[All Fields] OR "gwas"[AllFields]) OR ("association"[MeSH Terms] OR "association"[All Fields]) OR germline[All Fields] OR ("diploidy"[MeSH Terms] OR "diploidy"[All Fields] OR "somatic"[All Fields])OR mosaic[All Fields] OR ("mosaicism"[MeSH Terms] OR "mosaicism"[All Fields]) OR Novo, De[Full Author Name] OR ("congenital"[Subheading] OR "congenital"[AllFields]) OR ("family"[MeSH Terms] OR "family"[All Fields] OR "familial"[All Fields]) OR hereditary[All Fields] OR inherited[All Fields]) AND 1990/02 : 2016/04 [EDAT] This process fetches documents (abstracts) from a source, in this case Pubmed. The query for abstract retrieval resides in an external configuration file, passed asparameter. Output is cleaned up and formatted as CSV delimited file. set query datesselect colsyear and urlformat colnameswriteformattedwrite loggarbage delimitersget queryDocument Grabber Document DataExtractor Java Snippet Column Filter Java Snippet Column Resorter Column Rename CSV Writer CSV Writer Java Snippet File Reader

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Created by: peleitor
Created at: 2018-03-30
On NodePit since: 2020-05-10
Last update: 2024-04-15
Created with KNIME version: v4.1.2

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