SiLA_​Images

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This workflow demonstrates how to get raw images from a (custom) SiLA2 server, how to process the data with KNIME nodes, and how to send comuptation results back to the SiLA2 server.

**IMPORTANT**
This workflow requires a Java library that we have not bundled to keep the file size minimal. Please import the entire SiLA Prototype workflow group (see link below) to run this workflow.

**IMPORTANT**
In order to successfully run this workflow, you have to setup a custom SiLA2 server. Please follow these instructions to start it:

1. Make sure that you have at least Java 8 installed on your computer and that the according environment variables are correctly set. (You can check this in a terminal by executing “java -version”)

2. Open a terminal or commandline and execute the following command: “java -jar server -p 50052 -xml -data ”. (You can figure out the paths by right clicking on the respective item in the KNIME Explorer and selecting Copy Location > Local path)

3. Make sure that you see some output like "2021-01-08 12:37:31 INFO s.l.s.SiLAServer:97 - Server started on port=50052" in the terminal.

Developed by Mike Groezinger (mike.groezinger@siobra.de) and Stefan Helfrich (stefan.helfrich@knime.com).

Nodes

• Column Selection Configuration2 ×
• Component Input2 ×
• Component Output2 ×
• Integer Configuration2 ×
• Java Snippet2 ×
• Show all 22 nodes

Extensions

• FeatureKNIME Base nodes
• FeatureKNIME Basic File System Connectors
• FeatureKNIME Image Processing
• FeatureKNIME Javasnippet
• FeatureKNIME Quick Forms

Links

• SiLA Prototype workflow group

  hub.knime.com/knime/spaces/Life%20Sciences/latest/Laboratory%20Data/SiLA%20Prototype/
• sila-server.jar sources

  gitlab.com/SiLA2/sila_java/-/tree/KNIME-poc
• SiLA

  sila-standard.com/
• siobra

  www.siobra.de/
• BioSero

  www.biosero.com/