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01_​Multiple_​Alignment_​and_​Sequence_​Logo

Workflow

Seqan Tcoffee (Multiple Alignment) and Sequence Logo
sequence motifsequence logomultiple sequence alignmenttcoffeeseqan
In this workflow two different types of ATA-box motifs are loaded as FASTA files. The sequences are aligned with each other,using the SeqanTcoffee node.The shared Sequence Logo component shows an interactive view of the sequence logo and by selecting nucleotides fromthe logo the samples in which they occur get also selected in a Table View. Multiple alignmentExtract file nameLoad FASTA filewith ATA-box motifsExtract file nameLoad FASTA filewith mutated ATA-box motifsMultiple alignment Sequence Logo SeqanTcoffee URI Port toVariable Input File URI Port toVariable Input File SeqanTcoffee Load FASTA Files Load FASTA Files Sequence Logo In this workflow two different types of ATA-box motifs are loaded as FASTA files. The sequences are aligned with each other,using the SeqanTcoffee node.The shared Sequence Logo component shows an interactive view of the sequence logo and by selecting nucleotides fromthe logo the samples in which they occur get also selected in a Table View. Multiple alignmentExtract file nameLoad FASTA filewith ATA-box motifsExtract file nameLoad FASTA filewith mutated ATA-box motifsMultiple alignment Sequence Logo SeqanTcoffee URI Port toVariable Input File URI Port toVariable Input File SeqanTcoffee Load FASTA Files Load FASTA Files Sequence Logo

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Nodes

01_​Multiple_​Alignment_​and_​Sequence_​Logo consists of the following 26 nodes(s):

Plugins

01_​Multiple_​Alignment_​and_​Sequence_​Logo contains nodes provided by the following 7 plugin(s):