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Extract FORMAT (multi)

Node extension for KNIME Workbench version 1.0.24 by Pierre Lindenbaum

This node is a new version of the simple "Extract Format". It extracts a key/value from a FORMAT and one or more Call column in a VCF file. Example:
GT:PL:GQ	1/1:37,3,0:4


Knime4Bio. Author: Pierre Lindenbaum PhD, INSERM UMR 915, Institut du thorax, Nantes. Reference: manuscript in preparation. Please, report any problem here.


the FORMAT column in the VCF
the columns containing the CALLS in the VCF
The type of data to be extracted (int, double, boolean, etc... )
the name of the flag to be extracted (many separated by a comma or a whitespace)

Input Ports

VCF-like table containing a 'FORMAT' column

Output Ports

The original VCF table and the extracted new column(s)

Best Friends (Outgoing)


To use this node in KNIME, install Node extension for KNIME Workbench from the following update site:

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