IconExtract FORMAT (multi)0 ×

Node extension for KNIME Workbench version 1.0.24 by Pierre Lindenbaum

This node is a new version of the simple "Extract Format". It extracts a key/value from a FORMAT and one or more Call column in a VCF file. Example:

GT:PL:GQ	1/1:37,3,0:4

References

Knime4Bio. Author: Pierre Lindenbaum PhD, INSERM UMR 915, Institut du thorax, Nantes. Reference: manuscript in preparation. Please, report any problem here.

Options

FORMAT
the FORMAT column in the VCF
CALL
the columns containing the CALLS in the VCF
DataType
The type of data to be extracted (int, double, boolean, etc... )
Flag
the name of the flag to be extracted (many separated by a comma or a whitespace)

Input Ports

VCF-like table containing a 'FORMAT' column

Output Ports

The original VCF table and the extracted new column(s)

Update Site

To use this node in KNIME, install Node extension for KNIME Workbench from the following update site:

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