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DNA context(DAS)

Node extension for KNIME Workbench version 1.0.24 by Pierre Lindenbaum

Retrieves the DNA of a mutation using a DAS server.

References

Knime4Bio. Author: Pierre Lindenbaum PhD, INSERM UMR 915, Institut du thorax, Nantes. Reference: manuscript in preparation. Please, report any problem here.

Options

DAS DNA URL
DAS DNA URL. example for UCSC hg19:
http://genome.ucsc.edu/cgi-bin/das/hg19/dna
CHROM
VCF CHROM
POS
VCF Position
extend
number of bases on each side

Input Ports

table with Genomic Positions (CHROM/Position)

Output Ports

The new table appends the DNA context arround a mutation

Update Site

To use this node in KNIME, install Node extension for KNIME Workbench from the following update site:

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