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Big Bed/Wig

Node extension for KNIME Workbench version 1.0.24 by Pierre Lindenbaum

Joins data with a BIG Bed/Wig file.

References

Knime4Bio. Author: Pierre Lindenbaum PhD, INSERM UMR 915, Institut du thorax, Nantes. Reference: manuscript in preparation. The BigBed library was originally developed by Martin Decautis and Jim Robinson (broadinstitute.org) and is now available at http://code.google.com/p/bigwig/. Please, report any problem here.

Options

CHROM
The VCF CHROM column
POS
The VCF POS column (first base is '1')
Wig URI
URI of the WIG (possibly gzipped or bgzipped); Eitheir fixed or variable intervals.
Column-name
New Column name

Input Ports

VCF-like table (CHROM/POS)

Output Ports

Appends the data found in the Big Bed/Wig file to the input table.

Update Site

To use this node in KNIME, install Node extension for KNIME Workbench from the following update site:

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